BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB020D02LP1|AL427609
(680 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1122 0.0
>3x_Contig1800
Length = 38778
Score = 1122 bits (554), Expect = 0.0
Identities = 643/680 (94%), Gaps = 7/680 (1%)
Strand = Plus / Minus
Query: 1 ggctgggctatattmtacagacttcttaacaaaaacaagaacactcttaagtaaagatta 60
|||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 35906 ggctgggctatattctacagacttcttaacaaaaaccagcacactcttaagtacagatta 35847
Query: 61 actagcaggttcattctggttatgtgtgtgggctccdnkcttttcwgtagacagtaagcg 120
||| || ||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct: 35846 act-gc-ggttcattctggttacgtgtgtgggctccaagcttttcagtagacagtaagcg 35789
Query: 121 gtacatcgaatgtaacttgtcagttgtcaamagtaaagttacatattgaattgaaatggg 180
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 35788 gtacatcgaatgtaacttgtcagttgtcaacagtaaagttac-tattgaattgaaatggg 35730
Query: 181 agatcagcagtacctttgttgamgttagagatgttacaaaaagctcgtattaccgttaaa 240
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 35729 agatcagcagtccctttgttgacgttagagatgttacaaaaagctcgtattaccgttaaa 35670
Query: 241 agacccgaactaaactmagtataagatagttgtgtgacacmatactaatcccttttgtcg 300
|||||||||||||||| || | ||||||||||| ||||| |||||||||||||||||||
Sbjct: 35669 agacccgaactaaactcagaa--agatagttgtg-gacaccatactaatcccttttgtcg 35613
Query: 301 gatattgctaatatcatccacgaaaatttyycaaatcttagaggaagattgttmgtggca 360
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 35612 gatattgctaatatcatccacgaaaatttcccaaatcttagaggaagattgttcgtggca 35553
Query: 361 ttcctggtaacgttagagatcgaaaagaaatcatgtamatmagamagmtcaagaamtcaa 420
||||||||||||||||||||||||||||||||||||| || ||| || ||||||| ||||
Sbjct: 35552 ttcctggtaacgttagagatcgaaaagaaatcatgtacatcagacagctcaagaactcaa 35493
Query: 421 aaratcttgcatatkgamttcatcaacactggataatccattattggcgcagtcgatcaa 480
|| |||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 35492 aagctcttgcatatggacttcatcaac-ctggataatccattattggcgcagtcgatcaa 35434
Query: 481 atcttgagagcyaccggcagaaaagcttgaatttttgttttggactcyaacctcctgttt 540
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 35433 atcttgagagccaccggcagaaaagcttgaatttttgttttggactccaacctcctgttt 35374
Query: 541 tatatgcctctttctcacagacttcttttcgttgagtggtctacaaacttctatgatgta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35373 tatatgcctctttctcacagacttcttttcgttgagtggtctacaaacttctatgatgta 35314
Query: 601 ttgtagcagtatcttcgtatgttcaatataggattgttatgtatgctawgcaaatatcat 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 35313 ttgtagcagtatcttcgtatgttcaatataggattgttatgtatgctatgcaaatatcat 35254
Query: 661 gctttacattaaagaaaaca 680
||||||||||||||||||||
Sbjct: 35253 gctttacattaaagaaaaca 35234
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3916
Number of Sequences: 1807
Number of extensions: 3916
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 680
length of database: 10,358,551
effective HSP length: 16
effective length of query: 664
effective length of database: 10,329,639
effective search space: 6858880296
effective search space used: 6858880296
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.7 bits)